A consortium of scientists working to support robust agriculture for a substantially legume-fed world.
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Teams | Outreach | Resources | Germplasm
Sign up for our quarterly newsletters about the Legume Federation community or follow us on twitter @LegumeFed
Teams
Legume Information System and PeanutBase
- USDA: Steven Cannon, Nathan Weeks, Scott Kalberer
- ISU: Wei Huang, Ethalinda Cannon, Jacqueline Campbell, Andrew Wilkey
- NCGR: Andrew Farmer, Pooja Umale, Alan Cleary, Alex Rice, Sudhansu Dash
- JCVI: Christopher Town, Vivek Krishnakumar and Anges Chan
CyVerse (iPlant Collaborative)
- CyVerse: Eric Lyons
Outreach
Newsletters | Presentations/Posters
Newsletters
| Legume Federation | Legume Information System (LIS) | PeanutBase | ||||||
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| August 2016 | June 2016 | July 2016 | ||||||
| September 2016 |
Posters/Presentations
2017
- January 13, 2017: Legume Federation Project Meeting, San Diego, CA.
- January 14-19, 2017: Plant and Animal Genome (PAG) Conference, San Diego, CA.
- Presentation: Some New Online Tools for Legume Genomics
- Presentation: Legume Federation: joining forces to provide resources for legume crop research
- Poster: The Federated Plant Database Initiative for the Legumes
- Poster: Genome Context Viewer: A User-Friendly Web Application for Visualizing and Mining Shared Gene Content Among Multiple Genomes
- Poster: Integrating Genetic with Genomic Data in Legumes InterMines
- Poster: PeanutBase.org: A Genomic and Genetic Data Resource to Support Crop Improvement in Peanut
- Poster: LegumeInfo.org: Tools for Legume Crop Improvement
2016
- January 9-13, 2016: Plant and Animal Genome (PAG) Conference, San Diego, CA.
- Presentation: The Legume Information System and The Legume Federation: Working Together for the Legume-Fed World
- Presentation: Cool Season Food Legume Genome Database
- Presentation: What’s New in the Legume Information System and the Federated Legume Database Initiative
- Poster: What's New at SoyBase
- Poster: The Federated Plant Database Initiative for the Legumes
- Poster: Protocols for Representation of Protein Domain Annotations in Clade-Oriented Databases: a Case Study at the Legume Information System using Chado/Tripal
- Poster: Cool Season Food Legume Genome Database
- Poster: PeanutBase: A Resource for Peanut Researchers and Breeders
- June 30-July 1, 2016 GMOD community meeting, Bloomington, IN
- Presentation: GMOD in action: the Legume Federation project
- July 9-13, 2016 ASPB (American Society of Plant Biologist)
- Poster: The Federated Plant Database Initiative for the Legumes
- Presentation: Some bioinformatic tools for plant biology research in the legumes
- July 12-14, 2016 ARES (American Peanut Research & Education Society)
- Poster: PeanutBase.org: The Genomic Data Portal for Arachis
- August 7-10, 2016 16th Biennial Conference of the Molecular and Cellular Biology of the Soybean (SOY2016)
- Poster: What's New at SoyBase
- Presentation: Drivers of Genome Size Change, and Other Insights from Multi-species Legume Genome Comparisons
2015
- January 9-14, 2015: Plant and Animal Genome (PAG) Conference, San Diego, CA.
- Presentation: QTL Data Standards at PeanutBase and LegumeInfo
- Presentation: Tripal in the Legume Genomics Community
- Presentation: The Federated Plant Database Initiative for the Legumes
- Poster: The Federated Plant Database Initiative for the Legumes
- Presenation: iPlant How to Scale Data, Science, and People
- Presentation: Online Resources and Tools for Legume Crop Improvement
- Poster: New features for bean research at the Legume Information System
- Presentation: Legume Information System: An Integrated Genomic and Genetic Data Portal for the Legume Family
- Poster: Legume Information System: An Integrated Genomic and Genetic Data Portal for the Legume Family
Legume resources
- Center for Legumes in Mediterranean Agriculture - Publications and newsletters from this center at the UWA
- Gramene Plant Reactome - database of plant metabolic and regulatory pathways
- LegumeIP - Legume Integrative Platform (synteny and gene family tools)
- Legoo.org - A bioinformatics gateway towards integrative legume biology
- Lupin Genome Portal -International collaborative project to sequence the genome of narrow-leafed lupin
- Lotus Base - Genomic, proteomic & expression resources for Lotus japonicus
- Interactive Legume Database of Nodulation - Database of legumes and their nodulation status
- Medicago Hapmap - Medicago haplotype data and resources
- Medicago truncatula gene nomenclature - Gene symbols registry
- Medicago truncatula Handbook - Resources, protocols, etc.
- MtGEA - Medicago truncatula Gene Expression Atlas
- Medicago EST Navigation System (MENS)
- Medicago Affymetrix GeneChip GO annotations - static files with annotations for the Affy gene chip
- National Soybean Research Laboratory - information on production, nutrition, and other soybean news
- PeaMUST -Pea Multi-Stress adaptation and biological regulations for yield improvement and stability
- PhaseolusGenes - Phaseolus genetic data
- Tropical Legumes II - Generation Challenge Program; focus on resource-poor farmers in Africa and South Asia
- Tropical Forages - database of tropical forages, with extensive list of legume forage crops and information
- RevGenUK - Reverse genetics (TILLING) resources for Medicago and Lotus; from the John Innes Centre
- Wikipedia: Legume - Descriptive information about the family
Germplasm
- NPGS/GRIN - National Plant Germplasm System / Germplasm Resources Information Network
- Legume Germplasm Resources at LIS - GRIN Connect, Trait Evaluation Data, and Geographic Distribution of Legume Germplasm