A consortium of scientists working to support robust agriculture for a substantially legume-fed world.
Search Mines
News Page
2018
- March 2018 update:
- Federated Cross-Mine Searching: not sure where to start with the mines? Try the new keyword search interface and get results from all member mines with a single query
- Genome Context Viewer now supports entry page gene name searches for all federated partner genomes
- February 2018 update:
GCV now computes macrosynteny blocks on demand for any query chromosome against any federated partner genome.Try it here on the "Cultivated Alfalfa at the Diploid Level" genome produced by the Medicago HapMap project and click on any CADL gene to get connected to the Noble Foundation's Alfalfa Breeder's Toolbox!
2017
- December 2017 update:
- November 2017 update:
- Genome Context Viewer major enhancements, including ability to performing clustering and within-group multi-alignment
- September 2017 update:
- Wild chickpea Cicer reticulatum genome federated into the Genome Context Viewer, enabling microsyntenic comparison with cultivated chickpea types and other federated genomes, as in this example. Clicking on the "cicre" genes links out to available Cool Season Food Legume Database resources for these genes.
- New Legume Mine: CowpeaMine
- June 2017 update:
- Prerelease of CMap-js (still under development)
- Federated Genome Context Viewer with federated macrosynteny e.g. arabidopsis/soybean/medicago
- May 2017 update:
- New Legume Mine: ChickpeaMine
- April 2017 update:
- New Legume Transcript Annotation Tool
- February 2017 update:
- Legume Federation Project Meeting and PAGXXV presentations/posters available here
- January 2017 update:
- Legume Federation Data Store for bulk data (genomes, annotations, etc)
- Legume Federation at PAG XXV
2016
- December 2016 update:
InterMines updates: - September 2016 update:
- Lupinus angustifolius genome
- Lupin GBrowse and JBrowse genome browsers
- August 2016 update:
- First Legume Federation Newsletter
- Updated LegumeMines
- July 2016 update:
- New Federated Genome Context Viewer (GCV) tool
- GCV code repository
- New Federated Genome Context Viewer (GCV) tool
- July 2016 update:
- New Federated Genome Context Viewer (GCV) tool
- Updated Legume InterMines:
- Interlinked our Legume Mines together with one another and with mines maintained by other groups; e.g. ThaleMine
- June 2016 update:
- April 2016 update:
- Trifolium pratense and Vigna angularis data sets added to the Legume Federation Data Store
- Feb 2016 update:
- Outreach presentations & posters available here
- For more updates join LegFedCommunity Google group or follow us on twitter @LegumeFed
2015
- Dec 2015 update:
- New CSFL and Knowplulse JBrowse links
- Jan 8, 2016: Tripal CodeFest at PAGXXIV
- Legume Federation at PAG XXIV
- Nov 2015 update:
- New Legume Federation partners:
- July 28-29, 2015: Legume Federation presentation during the Bioinformatics Resources for Plant Biology Research Workshop at Plant Biology 2015 Minneapolis, MN
- June 22-23, 2015: Legume Federation kick-off meeting in Ames, IA