A consortium of scientists working to support robust agriculture for a substantially legume-fed world.
Search Mines
Tools
Several tools from Federation sites currently integrate across several legume genomics sites and projects. Also see "Download", which list a growing collection of legume genetic and genomic information.
Some existing tools:
- Legume Transcript Annotation Tool (legumeinfo)
- Legume Federation Data Store at CyVerse (mirroring Data Store at LegumeInfo)
- Legume Federation Data Store at LegumeInfo (mirroring Data Store at CyVerse)
- Individual Legume InterMines - Multiple InterMines built from various data sources for individual legumes
- Medicago InterMine - with expression browser, gene pages, integration with AraPort InterMine, etc.
- Combined Legume InterMine - A combination of the legume mines plus synteny between organisms
- Keyword search across gene annotations for sequenced legume species (legumeinfo)
- Keyword search across legume gene families (legumeinfo)
- Keyword search through genome browsers (legumeinfo)
- Sequence search across sequenced legume genomes and gene families (legumeinfo)
- Phytozome - with Phaseolus, Medicago, and Glycine
- Federated Genome Context Viewer (GCV) - View regions of genomes considered primarily with respect to the ordering and orientation of their annotated gene content.
New integrative tools anticipated here in 2017:
- Keyword search across legume sites
- Sequence search across legume sites